Segmentation Options

• Overview
• Segmentation Algorithm JSON File Structure
• Segmentation Task Definition
  • task_id
  • segmentation_family
  • entity_types_detected
  • z_layers
  • Properties and Parameters
  • task_input_data
  • polygon_parameters
• Task Fusion Definition
• Watershed Options
  • Input Data
  • Watershed Model Properties
  • Watershed Model Parameters
• Cellpose Options
  • Input Data
  • Cellpose Model Properties
  • Cellpose Model Parameters
• Cellpose2 Options
  • Installation
  • Input Data
  • Cellpose2 Model Properties
  • Cellpose2 Model Parameters
  • Example Segmentation Specification
  • References
• CellposeSAM Options
  • Installation
  • Input Data
  • CellposeSAM Model Properties
  • CellposeSAM Model Parameters
  • Example Segmentation Specification
  • References
• InstanSeg Options
  • Installation
  • Input Data
  • InstanSeg Model Properties
  • InstanSeg Model Parameters
  • Example Segmentation Specification
  • References
• Segmentation Benchmarks