Contents:
Installation
Command Line Interface
Segmentation Options
Overview
Segmentation Algorithm JSON File Structure
Segmentation Task Definition
Task Fusion Definition
Watershed Options
Cellpose Options
Output Data Formats
Analysis Vignettes
Experimental Features
Vizgen Post-processing Tool
Segmentation Options
View page source
Segmentation Options
Overview
Segmentation Algorithm JSON File Structure
Segmentation Task Definition
task_id
segmentation_family
entity_types_detected
z_layers
Properties and Parameters
task_input_data
polygon_parameters
Task Fusion Definition
Watershed Options
Input Data
Watershed Model Properties
Watershed Model Parameters
Cellpose Options
Input Data
Cellpose Model Properties
Cellpose Model Parameters